Scaffold Ga0318516_10019835

Overview

Basic Information

• Taxon OID: 3300031543
• Scaffold ID: Ga0318516_10019835
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3418
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001070	Metagenome / Metatranscriptome	787	Y
F006474	Metagenome / Metatranscriptome	372	Y
F009509	Metagenome / Metatranscriptome	316	Y
F102276	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0318516_100198354	F102276	AGGAGG	MRKLMFALAIVAGAFMTAGPASAQCNYALNDVGRFHGYVSGPCNGAAVGYNGAYPYHPNARAGAHPTVSAPKVITQTNGHNVGACDATCQTKCQGAWRALGFRSVNACVARWAKLNAEGTAATCETAIKANGMRPIRGC
Ga0318516_100198357	F006474	GGAGG	MWGAENEEPEMSFRHGYQQGAIEVFCAIERFLDPATREVLQAWIEKDVSMWRAKAMLGHPPNWRLNMIAGPRSAGRPHGGLDLRYAAGAGL
Ga0318516_100198358	F001070	GGAGG	MSNLDKMFGWFPHTQREWIEFIIVALLLWLLMVVAISELELPSIS
Ga0318516_100198359	F009509	N/A	MNWRRGLFRLWIVGSALFVIAVAFICYSEIKSYAEVPWARLEMCATIAFGIPLVVLILGWAFLGSAAERP