Scaffold Ga0318516_10009952

Overview

Basic Information

• Taxon OID: 3300031543
• Scaffold ID: Ga0318516_10009952
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4559
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000145	Metagenome / Metatranscriptome	1927	Y
F000792	Metagenome / Metatranscriptome	890	Y
F000892	Metagenome / Metatranscriptome	846	Y
F001064	Metagenome / Metatranscriptome	789	Y
F089583	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0318516_100099522	F000892	GGAGG	MTNRRGSTTARLVQAKAGEQLFERTQDHIRPLIGMIDELNEVGAEDELRVLRQQLTRLVFRAQPLTQR
Ga0318516_100099523	F000792	AGG	MREHMLLFCLLGLVLTAAIILAIAPGAVTWALSLID
Ga0318516_100099524	F089583	AGGAGG	MAPKPKPARVAFVFGMAVTILAMLTWLSRDLAAPTPPTEPIYQSQLLLLY
Ga0318516_100099525	F000145	AGGA	MAMTSKNRIVIYGPKNDGTYIVEFRTADGEALAISIPGGEARVIRHFQERMPYGLFVPDV
Ga0318516_100099529	F001064	GGAGG	MALSLRDVECDPIANRALNELMHHYTVAEEKVRLVLTKKAGDMKLFLYDLDDLHQLDFTHNQQMAKAIERLRVLSTTIVQQRESWKIRALMAEAQLLEATAKTSNNGSRQNVSDVRYASLKRYLAKRFHPDFAPGQGIEKVVRNEIFKEIWNEIDRLDQAVSATRFATARSSWAA