NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307380_10439931

Scaffold Ga0307380_10439931


Overview

Basic Information
Taxon OID3300031539 Open in IMG/M
Scaffold IDGa0307380_10439931 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - UN-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1164
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001120Metagenome / Metatranscriptome772Y
F055681Metagenome / Metatranscriptome138N
F089995Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0307380_104399311F055681N/AMIGFSLEFKKWYVVVRGPKGTVYSAFGFAKQMPVFTPAKTMSLQEYIDDYNDAIVF
Ga0307380_104399314F001120N/AMTKPKSLINFDRTIAGVNITENGIKSYTKSFKLGPFQLTLNGSDSGVHGSISLPGTGVSKRNIKII
Ga0307380_104399315F089995N/ASADKYGVGFVGGFISPDGEKFMMTNMSEEDTNALLPEDLK

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