Scaffold Ga0307380_10125697

Overview

Basic Information

• Taxon OID: 3300031539
• Scaffold ID: Ga0307380_10125697
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - UN-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2591
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001807	Metagenome / Metatranscriptome	631	Y
F020342	Metagenome / Metatranscriptome	224	Y
F076006	Metagenome	118	Y
F103180	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307380_101256972	F020342	N/A	MSAYTDYLNMFDRINLADCAKRRASANVLNEQRFNGEYDTARLWMKYRLIKTTHHSYVED
Ga0307380_101256973	F001807	GGAGG	MTVLAIEDTYFTQTHVTVTAVVDDMRLLYRATRFDPEEWAAALCTTTIELDPEEPIPLDEDGFCSYLDHLDPQWQVLDMSEEQ
Ga0307380_101256974	F103180	GAG	MIGFSIEFKRWYFVLRGPKGRVYLATGFAKRMPVMTPIGTYTLDQCIGTWPGDETDDELLDTLRSIR
Ga0307380_101256976	F076006	N/A	MQFHLPSNLQQELLAYDPKLKALAKQQEGKKPTKKAKYPLGKIPYLIPED