Scaffold Ga0307380_10099908

Overview

Basic Information

• Taxon OID: 3300031539
• Scaffold ID: Ga0307380_10099908
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - UN-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2994
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053753	Metagenome / Metatranscriptome	140	Y
F076869	Metagenome / Metatranscriptome	117	N
F098653	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307380_1009990810	F098653	N/A	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPENKPDYVFNIDYYNKWTNFNEGLLNKIRDYKKYN
Ga0307380_100999082	F076869	N/A	MITMFMITEVTKLVASAQKNNITFSQEYIDALYMLEIQDIVMLKESYNAEKILS
Ga0307380_100999086	F053753	N/A	MNHQLKFGYSQLGYNILVKINCKISSADAANLEKEYPEVSVCQTRNGYRIEGSFNTKINNVFAFQNFDNFKLSLALKMNDFKINKLIDKSQALLNQENMKLSVANLDEI