Basic Information | |
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Taxon OID | 3300031539 Open in IMG/M |
Scaffold ID | Ga0307380_10009885 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Risofladan, Vaasa, Finland - UN-3 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12073 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (33.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland |
Source Dataset Sampling Location | ||||||||
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Location Name | Finland: Risofladan, Vaasa | |||||||
Coordinates | Lat. (o) | 63.0472 | Long. (o) | 21.7116 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F007838 | Metagenome / Metatranscriptome | 344 | Y |
F014212 | Metagenome | 265 | Y |
F021450 | Metagenome | 219 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0307380_1000988510 | F021450 | N/A | MKKTISLFALLLLFSMEIQAQVTNVLNNFYTVWVKPAIPIIGGLVLIVGALANIGKVLGDSRDYRGFITSIVLYLAVYFCLVGIVAFIMAG |
Ga0307380_100098852 | F014212 | N/A | MKIRLILAFLIISVSASAQLIHVEGSKALGINYAYVKNGFNVSSRITFYKSGNLAYRASLDYERVSFDLSKASVVYANPELMYTFYILGDKVFFNVNGGILTGAEFISNSILDKKKNQFFVGENIGICAEYFITNKIMLNLDLDQRFFQLSKVGKASFIIKFGINYNF |
Ga0307380_100098857 | F007838 | N/A | MRTLFTFLLFLLTCEIYGQVPAGLTVVVKNPAWQAEDAAKESLEKADRIRQITTLTEQVNTQKESLQAIRDATEKLRKINRKVANYHNLELAIAQVSDSYTRVLGSLKAINEHNCFKPSEYHMLSESMMGLLSQTSYSITTLTVVLTDNFSEMSDGERLLNMNQAIKELRENIGVINSAIIEVEILDNQRMQLRTLNYINSVFK |
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