Scaffold Ga0307380_10009885

Overview

Basic Information

• Taxon OID: 3300031539
• Scaffold ID: Ga0307380_10009885
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - UN-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12073
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007838	Metagenome / Metatranscriptome	344	Y
F014212	Metagenome	265	Y
F021450	Metagenome	219	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307380_1000988510	F021450	N/A	MKKTISLFALLLLFSMEIQAQVTNVLNNFYTVWVKPAIPIIGGLVLIVGALANIGKVLGDSRDYRGFITSIVLYLAVYFCLVGIVAFIMAG
Ga0307380_100098852	F014212	N/A	MKIRLILAFLIISVSASAQLIHVEGSKALGINYAYVKNGFNVSSRITFYKSGNLAYRASLDYERVSFDLSKASVVYANPELMYTFYILGDKVFFNVNGGILTGAEFISNSILDKKKNQFFVGENIGICAEYFITNKIMLNLDLDQRFFQLSKVGKASFIIKFGINYNF
Ga0307380_100098857	F007838	N/A	MRTLFTFLLFLLTCEIYGQVPAGLTVVVKNPAWQAEDAAKESLEKADRIRQITTLTEQVNTQKESLQAIRDATEKLRKINRKVANYHNLELAIAQVSDSYTRVLGSLKAINEHNCFKPSEYHMLSESMMGLLSQTSYSITTLTVVLTDNFSEMSDGERLLNMNQAIKELRENIGVINSAIIEVEILDNQRMQLRTLNYINSVFK