Scaffold Ga0307380_10004496

Overview

Basic Information

• Taxon OID: 3300031539
• Scaffold ID: Ga0307380_10004496
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - UN-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18815
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (7.69%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004866	Metagenome	420	Y
F005243	Metagenome / Metatranscriptome	407	Y
F006666	Metagenome / Metatranscriptome	367	Y
F059027	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307380_1000449612	F005243	N/A	MSNSKTNPNLQDADPKMSKEEMAARREEITEFYKENIPHLEIQADYEGLLAAIEKSRAERMQAQMFMAQQYASQKGEGQPDPNTEEGKAFQEAMVKAMQGETD
Ga0307380_1000449614	F004866	GAG	MAIVNKVDLKHQVDINVSIKYQIVTYCFFNDILISNSDLKFLTELAKVQEIELTKFCLDAVGRGIFKSSQSARNAITKAEKKNLLLKKGHNKKTISLNPDINVQSNGLVLLDYKILGREPEEL
Ga0307380_1000449615	F006666	N/A	VNPKNYRDFKKGIADEVGVHPSVVDDFVSFYYAKVRKKLSTLAYPRINIDGLGTFYLRKNKLDEAILKNKSLLGNIAKRTYNGFAKSEDIQNNIVQMESAMLQLEQDIIRKKKFKNVKE
Ga0307380_1000449626	F059027	N/A	MAAPKQITKLKQQFESPAYDGVSRAETGNARLLHVNEVISWIRDVAVSSSYLDNAAAIAAGLKTGDIYHTAGLLKVVIPVVEAE