Scaffold Ga0310888_10018439

Overview

Basic Information

• Taxon OID: 3300031538
• Scaffold ID: Ga0310888_10018439
• Source Dataset Name: Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2871
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6475
  • Long. (^o): -79.9369

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007651	Metagenome / Metatranscriptome	347	N
F016471	Metagenome / Metatranscriptome	247	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310888_100184394	F007651	N/A	MSNDLNELIARKDKLEGELHLELSSDYNELMKNLSESFRDMHENSVQYYKQKANEELDKMEKNIQSGNKLSAINQKLLADTYLSFATTI
Ga0310888_100184396	F016471	N/A	MTEADKFGAVKDATVAIGLANKDTKDVISSFGTGFFIGGEYIVSSAHIFSQCIKYNAQNKDKNKGMEGIYSAFNITTNGDQLELNTYHIIKAIRLPPVKEVMGFTGSVDLDIGIGKLDRHSDNFLHIKEPTQLKLYDEIVICGY