NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302326_12666300

Scaffold Ga0302326_12666300


Overview

Basic Information
Taxon OID3300031525 Open in IMG/M
Scaffold IDGa0302326_12666300 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)622
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032020Metagenome / Metatranscriptome181Y
F062087Metagenome / Metatranscriptome131N

Sequences

Protein IDFamilyRBSSequence
Ga0302326_126663001F062087GAGVTTSEQYRARIKVLGLTPIGRASAGKYQFHRARGGRVYSIRDPDDLTKAEREEIIGYYERQFSLE
Ga0302326_126663002F032020GGAMLRNIGIDITIVPGNAGLFYARSWQMRSLMLVGRSEDELWLDMDPVLRDLIDIQGDKVVTMTMDRPGRRVSVDVE

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