Scaffold Ga0302326_10001406

Overview

Basic Information

• Taxon OID: 3300031525
• Scaffold ID: Ga0302326_10001406
• Source Dataset Name: Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 61363
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (58.49%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0477
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018873	Metagenome / Metatranscriptome	232	Y
F025357	Metagenome / Metatranscriptome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302326_100014061	F018873	GGTGG	MSTPSLGLPISAPLSRLKNKRVLLLDTSATMRDRRAESMRKLGMEVDCAADVSEARSWWRADLYSLVLIDMESGLGHRDKFCDDMRRASPPQQISFLVGKPGYLADIPKADGVSLALKSSGDQSVRDDVRAALAAVLPGASQRWGILEASRRISAVRSLSHARSRAAQDRPVPPRD
Ga0302326_1000140653	F025357	N/A	DLDLIVKYQAADISNTNQAYQNNVTVIKALVAKYPEVRDAFAGVVARAVDPSGRDYGTLLAMKDVK