Scaffold Ga0302320_10935376

Overview

Basic Information

• Taxon OID: 3300031524
• Scaffold ID: Ga0302320_10935376
• Source Dataset Name: Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 932
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0477
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006594	Metagenome / Metatranscriptome	369	Y
F033738	Metagenome / Metatranscriptome	176	Y
F104334	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302320_109353761	F033738	N/A	NHARVEVILKDIYRKDDRIYVRYAIQNNGRSAYVPGTPGVFTLRSPRSSCSLYTLSQSQLIGDGIRITSKGQAPVKVLNAEVHANAVAPGGTTWGLVAFEWPPRANGPAVVRFAFAPDGAGEVSAVLVL
Ga0302320_109353762	F006594	GAG	MEQDGEITAERVLRLVRSRTSPAIPQEAASIQSTSATRIVETFRARFAKACDAGVWKRLSNAVLEPANPFDFKARRQLRQEAVVLGTLVFAALGLAVYFNLNAMAR
Ga0302320_109353763	F104334	GAGG	MARNREALNRILRRGEDAGLLLSTTALMLVEVGYVAWLERLPALPSPAHPAGFIDLPPWYERPRVEVTL