NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272428_1027838

Scaffold Ga0272428_1027838


Overview

Basic Information
Taxon OID3300031520 Open in IMG/M
Scaffold IDGa0272428_1027838 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5411
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.57Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003525Metagenome / Metatranscriptome481Y
F010364Metagenome / Metatranscriptome305Y

Sequences

Protein IDFamilyRBSSequence
Ga0272428_102783810F003525N/AMLIVNDEHRIAAGIKSLSKRCSYCCKPLKEYPLIMNDDAGFAVFHAACAAALATDIIVDLYTFFRPPAPYHHLFVLDPTGERAPGEEAYAVNGS
Ga0272428_10278389F010364AGGAGGMQSTDLEEIKAALWEQASHPCTRVKWGVAQVMAARFRKGQLLVLLRGRGRWYPVEAVTIERPRLCPTGACDLEDGPNERSIFSKREA

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