NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307488_10223894

Scaffold Ga0307488_10223894


Overview

Basic Information
Taxon OID3300031519 Open in IMG/M
Scaffold IDGa0307488_10223894 Open in IMG/M
Source Dataset NameSea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1258
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009454Metagenome317Y
F022152Metagenome / Metatranscriptome215Y

Sequences

Protein IDFamilyRBSSequence
Ga0307488_102238942F009454GAGGMYEAIEAAIAEVQQPRSRFQLERFVMGSHATPEMRYYQTCLELQDMIHKYQLAKIGVQKAELKIKRFRETKDEMKELKAQEVEVTLRQTRLAMIGAERELNDLVKIFNGFDTKFTRAEIEAAQPDYWQSRLTSNAKAMLMGGSSVNASHIEAMEQAGVLDNFIAEVEQSKRELGL
Ga0307488_102238944F022152N/AMSEQIPRNSTQQQLLLQLIGDMAEVKAGFKMIQDHEDRIRELERARWQTAWITAFASAALTAFA

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