Scaffold Ga0307488_10013127

Overview

Basic Information

• Taxon OID: 3300031519
• Scaffold ID: Ga0307488_10013127
• Source Dataset Name: Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6714
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.3731
  • Long. (^o): -156.5049
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009033	Metagenome / Metatranscriptome	324	Y
F010625	Metagenome / Metatranscriptome	301	Y
F019396	Metagenome	230	Y
F048972	Metagenome	147	N
F070579	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307488_1001312711	F010625	N/A	VDGKLKSMNYFFTYDNNDVNISLRSVMSHISEDRQADLFPKMKAMGIDVDAPTNHNAIQQLAFESFKTNFRDDVMEKAKQIYA
Ga0307488_100131272	F009033	N/A	MDLYLNKSWKRIGISLSGGADSALLAYLICKNVTITTDIHITSQIRCWRTRPWQEFYVDSVISWLKKEFNNNFFVHKNLVPPEMEEPNTTLIKDEYGKMKPGNRIILRSHNEFIANKYKLDAIYVGVNQNPDIDIPGQLDERNEGVLDPHFVHNGVDICHPFVYTKKDWIIRQYYKNSIEDLLDLTRSCEGEFEGLDYTTYTPGQDVPECGECFWCKERQWGIDNA
Ga0307488_100131274	F019396	AGGA	MNIDNWQPYLKLDTEGQPCMAQQTYEPLVSPDGKTFCKNYKFPNEYQYRDEKDRPLYTDEVCDWFFDNEVKYLLEFEDKPYAPEDIDIDFANRQIFLKWHSKSCNQIMYAPNGFWPQGEWRDQIKDIILDQYNEGIYKLTMYPHCHYIDSQGQMRAIDWYGCVPIDKPYIAEKYMQGIIHETAQFRLDETGAAVNNVLNLETMFKRSLGEHVFWGNQNMSYIYKELFNA
Ga0307488_100131276	F048972	AGG	MKNLGVCDTIDWDKVIKQCASVDPQFIGPSHKRGDTIPGLDPILDMWEEAGYKTIHEGGTAGWDMFIPGKQFDESVVDAWNTYYGLECNNVWISRVWPGKFAPIHWDVHDDEANLSDCPRYHCHIGTPQWGHIFIADEELFYNQPQGTTWEWTDRKIWHAGTNCGTQPKYIWNAW
Ga0307488_100131278	F070579	N/A	MTFYITGSTRGLGKYLCKHFDCTSVNRPTDLTVDIDKVVDLFEEGDIVILNAHANQIEYVNLLKDRCKLVVMGSIAAVNFDRDMPEYSKQKWELEKTVQQLALHSKYPMLYLQLTSSSYKNYKMIANSIQFWLDNPDTTFIGYNINE