Scaffold Ga0307488_10008972

Overview

Basic Information

• Taxon OID: 3300031519
• Scaffold ID: Ga0307488_10008972
• Source Dataset Name: Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8133
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (94.74%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.3731
  • Long. (^o): -156.5049
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F052546	Metagenome	142	Y
F053980	Metagenome	140	Y
F060890	Metagenome	132	Y
F076077	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307488_1000897210	F000325	AGGAG	MKTAKGNDKLGKENCIVVSRPVGDTCPPTCDFLGNGCYAEQLEKIYPGVRPAGMMNLITEKNKIRAMLVDCAKKDKDLRWHERGDFFKNNSELDNEYVDNILWACESILNDGGKLPKMWAYTHIYDTKLSMVLGKYIKMYASIHNEDDWAVAKAAGFKLFAWCDSSENIAPKRPRSKKKADEWRSSLPKLKIIGQEKYITCPEIRRGRGVVTCTKSKNSVNCQLCVQGLANVLFPSH
Ga0307488_1000897215	F076077	AGGAG	MFNEQEKLEITIDGLRNGDIFMSEDGIPVDECGDPIFEDDA
Ga0307488_1000897217	F053980	GAGG	MNGYELLAQYKKQIKECFTVPNEWLPEEFQDNRTDCVSLEDIEKKCDARDKCTLSDFEENSIERAKRVQIYRDQIERGLEIDYMP
Ga0307488_100089723	F052546	AGAAGG	MIIHFYSSYNTTALLIFMLLFSGCTIIPTRNTLTLNKTIELDERAIEDINVGLRFEWIR
Ga0307488_100089727	F060890	AGGA	MIESMKLTKHDYEMLADIADAHYEETVELQKDHYLGDDTDYFKKLEYLEELIDKVVYMIGVCSAKDE