Basic Information | |
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Taxon OID | 3300031519 Open in IMG/M |
Scaffold ID | Ga0307488_10001777 Open in IMG/M |
Source Dataset Name | Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 18100 |
Total Scaffold Genes | 29 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (79.31%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Alaska | |||||||
Coordinates | Lat. (o) | 71.3731 | Long. (o) | -156.5049 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F010910 | Metagenome / Metatranscriptome | 297 | Y |
F012114 | Metagenome | 283 | Y |
F018906 | Metagenome | 232 | Y |
F019646 | Metagenome | 228 | Y |
F093724 | Metagenome | 106 | Y |
F093848 | Metagenome | 106 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0307488_1000177717 | F019646 | AGGA | MLNTSKNFEIVYSSDCCGTSVHSDADICPTCYEHCEVIEDRTDYDCSEAVHFQASLDFYGAG |
Ga0307488_1000177719 | F012114 | AGGAG | MSNNNCVVYPRANVWAVIDTEGKKIGEVGAMSENEARQKVADHVIIPFTLSHIEE |
Ga0307488_1000177721 | F018906 | AGGAG | MKTKVNPLKLIETRFELDSMNKGRYVKRYFFSNGLGASVACHSGTYGGDAGCFEVGILKYPLGTTPENTCELIYDTTINHDLGCMDVHGWLDFFEVADILQRIRNYNTGNYRSNIYVRD |
Ga0307488_1000177723 | F010910 | GGAG | MLTIYTIFGIMIGFEGYDNGKVYFGVYTPNCEYGYVMTAEEIYLDTIYEIR |
Ga0307488_1000177725 | F093724 | AGGA | MKYYFDEFETEDIQMWVRECGRDIPRAKLRGDLEDIKTLENVVRSGAKELLQRLRDENE |
Ga0307488_1000177726 | F093848 | GAG | MNEYVEDSLYDTLDKLSTRLVQLYYVNSWELDDQDGMRVSGNILYARNYYERA |
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