Scaffold Ga0307488_10001777

Overview

Basic Information

• Taxon OID: 3300031519
• Scaffold ID: Ga0307488_10001777
• Source Dataset Name: Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18100
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (79.31%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.3731
  • Long. (^o): -156.5049
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010910	Metagenome / Metatranscriptome	297	Y
F012114	Metagenome	283	Y
F018906	Metagenome	232	Y
F019646	Metagenome	228	Y
F093724	Metagenome	106	Y
F093848	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307488_1000177717	F019646	AGGA	MLNTSKNFEIVYSSDCCGTSVHSDADICPTCYEHCEVIEDRTDYDCSEAVHFQASLDFYGAG
Ga0307488_1000177719	F012114	AGGAG	MSNNNCVVYPRANVWAVIDTEGKKIGEVGAMSENEARQKVADHVIIPFTLSHIEE
Ga0307488_1000177721	F018906	AGGAG	MKTKVNPLKLIETRFELDSMNKGRYVKRYFFSNGLGASVACHSGTYGGDAGCFEVGILKYPLGTTPENTCELIYDTTINHDLGCMDVHGWLDFFEVADILQRIRNYNTGNYRSNIYVRD
Ga0307488_1000177723	F010910	GGAG	MLTIYTIFGIMIGFEGYDNGKVYFGVYTPNCEYGYVMTAEEIYLDTIYEIR
Ga0307488_1000177725	F093724	AGGA	MKYYFDEFETEDIQMWVRECGRDIPRAKLRGDLEDIKTLENVVRSGAKELLQRLRDENE
Ga0307488_1000177726	F093848	GAG	MNEYVEDSLYDTLDKLSTRLVQLYYVNSWELDDQDGMRVSGNILYARNYYERA