Scaffold Ga0307488_10000407

Overview

Basic Information

• Taxon OID: 3300031519
• Scaffold ID: Ga0307488_10000407
• Source Dataset Name: Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35215
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (17.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.3731
  • Long. (^o): -156.5049
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059988	Metagenome / Metatranscriptome	133	Y
F067802	Metagenome / Metatranscriptome	125	N
F071751	Metagenome / Metatranscriptome	122	N
F080618	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307488_1000040726	F071751	N/A	MKSILKFTEFVNENLNEANLPSWVESGPYDNLKGMFAEDFEDDEYDGMTIADVDKNYKPALKYLGVKSIADMGFISNSANDDELYDIVDPQMKSSNFLGNDRGKGMNPTPYTGAYKGMLGDVKIIILQDINQENMYAYAAVDSRGNLK
Ga0307488_100004073	F067802	N/A	MIKEIYSREVDAPKYNDDIIEVTDQLQQLILKIENCLFTRQGDVLGSPNMGCNLDDLIFSLVLNESVIAKKISSQIQTYCLNSSSSQFGIDVRVQFYSVVERNGCLVDIYVNEQRVIGAL
Ga0307488_100004075	F059988	GGA	MNKFTERRTGMPSIYKATYEDGWELKNLGNDYNENLMKNSFSNYMFRNARLGSFIEFYLKPIMTFWINKVKYLRIFYNFGVPKDYQKIN
Ga0307488_100004076	F080618	N/A	MANNWQHLNFFDKNGKYYNFDYDYSSDKWTGTVYLPEVSIGLFEVGQLFILEEFIDKNTNAKKFGFPHGIEVATGTTGSTNGVCNWNAEWQTTDPTEIFLFQFNMNFNSGTQTSLELEPDGPPLQVITELEIPLGSDPTETVNPEGYTITDIIESEALQINFAIRSETENTFKRTLLIKDDCTGNVIAEILVWGETVGEDERLRIMTQNMGYNILESDSSVFRDTNIKEILPNFEEVNLKRKEIMMEGSNIYPFIGSYKGLINAIKFFGYDTLKVKEFWRNVDANSPMFGKYIQSNAISILDPIVQLNDKEITLPNKRFRKTSLFSLVYKINEIVPDKFTDEDLPITEEVYDFTIEEILIKLFGLKKKLENEFLPLNARIKDITGEADFFGLLEVVNTNSRNKKDEIVAGIDTNFKLSTDDCIYMDDLRSFSSFCLASEAIVNEAILNFCNAYISPLTGNEAIGRNLVLGPISTGEVYPPAPVGPDPNSPLGSLYDGNNTTVSALADAFLAYFTRYAPNLSRVGAWPDGKSSYYLPDKPGIPVGAMTVLENTSFNNITWNNVDSTWDQLNNANTFFTFDIDPQGVAAGDVFTVNDPGTNTGATYTAQVGDTDTEVRDALYNQLSALKNSFTEPWVYFDISKVNVVTGDVIRLFGQNLNKLKVTCDSIYGSQLLFNQLPGETLFTWGGIEKGNFDEIEWTIYKDANDNTPAYYKVYRGPLSQYNKLPLILPYVGTYSVEMKLYDLYNNISSNVKPDFICVDNREVEYSGWYQSRKSNYTWSSEGKYLWNDYGSLWNLPIEPAITWDEETPGLYSSLDRVNAILNNFGLGTSPDFQLLNYQDDGKASFSGPYRWDNLNTGGWNDTYHLWWDMTSTTGDTPAFFQFKEVEPETYLKITDVNGETAEHYFDSTTTTLAQAAAGLNTSTNRIINKYVYNVVYDASSNQKFVQAVCRYFGVHGDWKYLDIVYANGDRACPSTGVTGAPFPTGATGCPSLIYRKGLSKSSNPTWNTAKFINNGKTMPKMTWFMFVYDKCKIPGKANPRWIIKNTTNSKIADIYFDSKYLTYLFKESGKYEITLELTDTNGNKYKKGRNILVIK