Scaffold Ga0307488_10000126

Overview

Basic Information

• Taxon OID: 3300031519
• Scaffold ID: Ga0307488_10000126
• Source Dataset Name: Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 53999
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (82.22%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.3731
  • Long. (^o): -156.5049
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040106	Metagenome / Metatranscriptome	162	N
F042905	Metagenome / Metatranscriptome	157	N
F042906	Metagenome / Metatranscriptome	157	Y
F052547	Metagenome / Metatranscriptome	142	N
F080057	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307488_1000012631	F052547	GAGG	MGIVTNNKRAAQADKDFDLSFNEGHEIKIQFNCEVLSGCEFKCKGCFVNKLGSNMGSYDRLNNAIDLFNKNGYRVSTINIGPTDLFGNNNVIELLKDETFRECLSKVSTIQFVTTLTSISQEVIELLNSIPKIDGFMYDANIALQPPVNWDWVEERLDLLNGFTDDLNYYMVYNMGNDDEYNSKVLEMSELVEDRFDSILTLNPSFFRAPKSKVQKHLIEKWKGYDFSDDLMPKTFIDQAQGGSLELNYTYCNERFFWTPFVYDIALIGTDEFQVKDENDIESWTEAKSFHFMKQLTYSNETINCGSCPNMMTCIDKGVLSYMEHHSLVSCVFPGVIAT
Ga0307488_1000012632	F080057	AGGA	MLNNEWKDIVSGGGIGEEFTSVDSMKQYKIQVNLEILEGCSYMCPGCFVKRRGNWNPKSISLFHELSYELKDREDVVLDDIVIGPTDFYGAENLIDIINNPRLADAILMMPKDNRNIQHNCSILGSLSEKDIQGKIKAIEESPLGKVVEAWDVQIALDLNRLMNDQEYLNALDERIETFKNSSLNFEISMATNIVHGVEDILYPAIDFVRSKYETVIEVLPSVVRSFNHSAKHGDKLFEWNDMLTRLAIDQHRFKNKFHFLQGDVSHKAFNYSVVSLHQGNMYMSPFIYENAQLHNDAFKVNIDGNIVDSILNKKNKVVNDQIEQSSDKECGSCKYLNICANRMVPMIMDTVFDGRKECILNKDVIGLYDDEVYHGNSY
Ga0307488_1000012633	F042906	AGGA	MPLIKNNLYYEMTTETQTKPVSAVKIQLDVLDGCHHKCPGCFVHRRGNSSDKHQLNKAKEFIRSITDQGILVDEILIGPTDFLASENFYEVMPELLDIINENNPILAFVSTLIDGDIEGFCEYITDNVNINTEIEIGIATNPHKFFKEDYVQHISDMLYYIDQNLKHEVTYTFVVNIKDYGLDYTALHAHAVEKFDTILDFIPSVSRSHKANIILKTLDEFNDYFNTWHRESKLNNIMIDHSHAGMNYTVLNYKRGEWYLSPFMYENMAIYDPMFLVDDFNDVNVMVEEQIQRAKGTECEDCPLFFSCYNRKIIMLRDYLGVDRCIAPKENMLNNIHNYNGPAQTMYKWDGYSVENDKQGYRKKFLVTEDDDPELERIKDISYVK
Ga0307488_1000012634	F042905	N/A	MIVHLNSTYAGYYSYDEDKSPINTDFLRTEINLDILHGCSQMCPGCFIPRKNLTKADNLETLYNLLIKGQYHPDEITVGPTDIFDAENFNDIMYHPYMEKLYGISAIGFSSALTQPYMLIKEKLAVIWSLYRNIHRVPDIDFKIVLDINKYLDGDLDDFYKNLELFKLGSVQFRVNYHKDIFKRISYNELAQRVFDDFNAPVVITPSFLTDRNVRGKVSQHLENFRREMVEQKIDKRWLNLYTFFDAKFNGYGCQNYSFYNNKLYINPFLYDVIIQRTPQFETDMDANTLYDNIEYAQQVDDCNGCEYMMSCAERNVHLYMESRGLDTCVALKEYMYASN
Ga0307488_1000012637	F040106	GAGG	MSMQKSYCKQMRYSGPESLAPSDTNKFDVLIQMEVLAGCDHGCLGCFVDKNIDPEMNQMIIDRAKELTDGIKRTGLNLREFVIGPTDFFSATNTESVLNNSVVQEIMREHTGARIAAPAKFDIATMEKVEEIFAILDDEDKFRREMIIEFIMPIGKVSQMLDDEDYFNSVMQKVKFFKDSTPKQMDWSWTLQASNVVGKKIDKETYNRIIQKSVNEYETIVEMNPAFSRARSELIQRRNLFGWNEFLGKVIDEDNAQETVMSMANLYCNSINFVGLTIVPGADGPTTHLNVMLHEQAFFLNNKNLDVTGLSFEEILDRKNELVTKGINKSSKVSDCADCKFAVACASRLIFEAQESLNVNGCVLNKDVLDQYNPTDWTWNDDAMEKLGAIS