Scaffold Ga0307488_10000107

Overview

Basic Information

• Taxon OID: 3300031519
• Scaffold ID: Ga0307488_10000107
• Source Dataset Name: Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 57963
• Total Scaffold Genes: 78
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (11.54%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.3731
  • Long. (^o): -156.5049
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043412	Metagenome / Metatranscriptome	156	Y
F046001	Metagenome / Metatranscriptome	152	N
F061271	Metagenome / Metatranscriptome	132	N
F076593	Metagenome / Metatranscriptome	118	N
F092077	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307488_1000010710	F092077	N/A	MTKELSPLQRSFDRINELIPHSHDVLLRCSLYEMCVELTNKSFSEGINTKY
Ga0307488_1000010715	F076593	N/A	MILTEHQKNELDAVADSVAHYIEDHLRETISWQTPNELIDTMNDGQFFEALDYTYNKVLQLITE
Ga0307488_1000010723	F043412	N/A	MEMTKEELQLKVNELTQSLDTFNKNTEMLKQDLAVTKRALEVADRPKITQDQMTEIQDAIYTVVNNVDFTDCNNYDMDFEIDYDNRIAVSNMEFNNSDEIADDISSEIGSLFNVIQPENE
Ga0307488_1000010778	F046001	N/A	MTKIQFNTNYKTINQITNSNKLNRPVHIMSDGLYVDNSDLETVGKILDR
Ga0307488_100001079	F061271	N/A	MIHELAKVVHQWDEDNDRWMYIEYDNDGMVMGLNFMQGDEYECFKKDWCVSDKGLTAFYKQMLYTFAYENGNVPEHCFINSCMWAYHSAISEYEDNDCKIGNATKCYANKCCKAISGR