Scaffold Ga0308398

Basic Information
Taxon OID	3300031516 Open in IMG/M
Scaffold ID	Ga0308398_1009221 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20051001_T9
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20051001_T9

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3515
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3515

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5387	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5387

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007404	Metagenome / Metatranscriptome	351	Y
F014738	Metagenome / Metatranscriptome	260	Y
F072382	Metagenome / Metatranscriptome	121	N
F075533	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308398_10092211	F075533	N/A	SADITVTTTFCFGWVIGVRANAGNETTAGATSVTFRARINTHPFSDALLAIALTARGGCCGVYIPFPSNITITKPDANLRDIIEQSNITTIRYHRKRFLRDRPLPVIDFRTDSTLTWRFPETTRVIDISKAPNRVYAQYRGYWTDHLTSTTSILSLESRRQQLAWRVASVGEYGSKAIAEDRRNETAVALDRQIAPLTVELDNSRYELMTREGVTVPNWAADVSDYAIVPGYYRNAKITSRTITRERTTYTVSFNPDDFVTVLR
Ga0308398_10092214	F007404	GGAGG	VDIIEILQLLAAGHAGLTAADYLWNALFGAIGAATAYLADTNGEVFLPRYDREQHSVELGALGRVLVGAGAGTLVGYSGYIPFIAGVVAPTLLPLLIDKITVFVERRRR
Ga0308398_10092215	F014738	GGAGG	MKLDVLLLVSAFALAFVHPDATQVAATAVVLLLVTRIERGRRAGKKRSAPVAH
Ga0308398_10092216	F072382	AGGAGG	MKTIYHTKDVWFPPFSIKIEPRRGTWFADVYVRYTEDSSLDDKYNAYIGADNFLADTPIPAADRRDVAKAIESLVFDYGLVGLVIYPTREGWGVNITLCPELENQYLRGEGATPADAIRNSAPYPPPLRNV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308398_1009221

Overview

Ecosystem & Geography

Associated Families

Sequences