NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308396_1001185

Scaffold Ga0308396_1001185


Overview

Basic Information
Taxon OID3300031515 Open in IMG/M
Scaffold IDGa0308396_1001185 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050930_Pe2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14042
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (18.75%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000353Metagenome / Metatranscriptome1246Y
F038253Metagenome / Metatranscriptome166N

Sequences

Protein IDFamilyRBSSequence
Ga0308396_10011857F000353N/AMTTQAQVSGTELKVRIEKALTEKSLKKLITNLEKELNGEHSFLPHDVEAQIRREITSAGVAVSQHGGWYRCIAAYLLLPRLEELLQVKSMGGEQNIAPIVQKLRNEALRESLSTFGLEVPARYARTSSGTGQTRVRIPREQKQQLVENFLDALPTFEVLQDVLDTLPKNTNLMVKQIRSLVKRYLAIANRLQSVAAHE
Ga0308396_10011858F038253N/AMSAMETHDKNMTGVQEELLNIIQSDEARELVESMANRMAVIEEAYYRIRELREAVQPYIPDNSEHDEEYWIAAYLVRPHASKVIEKFRQLREIQHKLAKIEGQLQEMNRKESYLENKLGDLDSVQENIGDNIYKLISEYASGALPRFFVFPSSAEMQNGN
Ga0308396_10011859F000353N/AMTEAKVSGTELKVRIEKALTEKSLKKLITNLEKELNGEHSFLPHEVEAQIKAEIASAGVAVSQHGGWYRCIATYLLLPRLEELLQVKSMGGEQNIAPIVQKLRNEALRESLSTFGIDVPARYARTSSGTGRTRVRIPREQKQQLVENFLDALPTFEGLQEVLDTLPKNTNLMVKQIRTLVKRYLSIANRLQSVAAHE
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