NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308390_1026179

Scaffold Ga0308390_1026179


Overview

Basic Information
Taxon OID3300031514 Open in IMG/M
Scaffold IDGa0308390_1026179 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20040719_149
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1814
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F098169Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0308390_10261791F098169GGAGMSVKYRVWKVRRDGVSQRYRVAPSREHDDAVTAVMGGDLATAESRKQQKLARKLLQNPSVQESVYRSLVRQHEKTISTDVGPMLFLQNYLSRGYPEAEALLVRLATEPSDRNVRFAAIYAIATSMDPRAPRLIREIADKAPDEWTARTAIIYLATYLEVTMENLLGEGITPTRDEVLDALEMLGLAMQGEWFRPEDEIRYILAALNYKRSEFEQAAQGQIPDSVEQQVINGLMSVLSLGSLSTDGFEQTLGVIKKWGSEYAISKLRSYLSGLSLKWRRDMVFDA
Ga0308390_10261792F098169GGCGGMGVKYQVRKVRRDGVSQRYWVAPTREHDDAVIAVMSDRLATAESREAQELARKLLQNPSVQELLYRSLVRQYEETKSSDDGPMSFLQHYLSRGHPGAEALLVRLATEPSNWHLQYAAVITIAKSMNPRAPRLFREIADKATDEWTARSAIFNLAINLKVTMENLIGKGITPTREEILDALETLGLAMQGKWFEPKPKGEINPILAALNYKRFDFEKATQGQIPTRVEKQVIDGLMSVLSSGDLTNEMFEKALNVIKEWGSEYALSKLRSYLSGSLPHERRAKVLDAIQEIEHRPKRSSSQ
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