Scaffold Ga0307509_10142780

Overview

Basic Information

• Taxon OID: 3300031507
• Scaffold ID: Ga0307509_10142780
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2326
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.0356
  • Long. (^o): -122.86

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011985	Metagenome	284	Y
F055313	Metagenome	138	Y
F072893	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307509_101427801	F011985	N/A	VANFHEEILRQTYSRIADLQEQVQLTYWSEHHLVPQDLLDILPFGRLFSAQSFYRYIDFQLVDLLNAARRCTAYWQLSGAHNFDQSPATQISLFYDETFLWHYFVPSHRPEIVTQIQAGHRIRFLSRFFVSEVKVEVEFNEIRLQTNTSGEFNPDNLYQIVYSDERILTYHWNIRAWNTNLLTPATTLIDPSSYFTLPITQPNTQGRDTEYLERFQRILLEPDLLSLDSSYHDSVDSSVPPTLVGTPQSSPPSTPESVYQRAREITFSNDNPDLCFCGIDLCRCDSRHPGTPPTPLGIHLWDPRFFRAGPIEGL
Ga0307509_101427802	F072893	GGGGG	VFAYFSTNVDQGEGAVGVDVDGVMGVGTERSDEVGGCVSIEVLGPGDVVEELAVDEFLG
Ga0307509_101427803	F055313	GAG	MTTLLVVDRVLMRVSVGSEARWGGKEVFKWADVDGRVEYGGRERSG