Scaffold Ga0307509_10141238

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307509_10141238

Scaffold Ga0307509_10141238

Overview

Basic Information
Taxon OID	3300031507 Open in IMG/M
Scaffold ID	Ga0307509_10141238 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2343
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Washington
Coordinates	Lat. (^o)	46.0356	Long. (^o)	-122.86	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011985	Metagenome	284	Y
F072893	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307509_101412381	F011985	GGAG	LVPQDLLDILPFGRLFSTQRFYHYIDFQLVDLLSAARRCTAYWQLSGAHNLNQSPATQISLFYDKTFLWHYFAPSHRPEIVTQIQAGHRIRFLSRFFVSETKVEVEFNEIQLQTNPSREFAPAQLYQIVYSNERILTYHWNNRVWNTNLLTPPTTLIDPSSYFTLPITQPNTQGRDTEYLERFQRILLEPDLLSLDSSYHNSVDSTLPPTLVGTPQSSPPSTPESVYRRA
Ga0307509_101412382	F072893	GGGGG	VFAYFGTDVDRGEGAVRVDVDRVMGVGAEGGDEVGGCVSVKVLGPGDVVEELTIDEFL

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