Scaffold Ga0307509_10094855

Overview

Basic Information

• Taxon OID: 3300031507
• Scaffold ID: Ga0307509_10094855
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3041
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.0356
  • Long. (^o): -122.86

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016489	Metagenome	246	Y
F029295	Metagenome	188	Y
F044236	Metagenome	154	Y
F059500	Metagenome	133	Y
F075486	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307509_100948552	F059500	AGGGGG	MSVDFSHLASSAAFDVLSYEDFHSGPPVVRCNKLEGFGNSGMSSSFVVVKKGCYSPPKVIVCHNNKCRSMVPVSAVQ
Ga0307509_100948553	F044236	AGG	VTPSELIASLQGIKTDAFEQSVSVIVRMVLYPPDKGNLVIKSIATVSKGQAFSVGVIGNIGG
Ga0307509_100948554	F075486	GAGG	VPVVLLGATEYTKVLFKGLVRSFAGSICLRVIGCADVLADV
Ga0307509_100948555	F016489	N/A	VSRDAWKTLWIFQVGGNLILYATLDIWETTLKGPYLLGDNLGVMLLGSRRFVPSNQTLDLMGNGECRGHSLIQDSCALRCASWAAFLASSIAESRCLRDGMSVFLVG
Ga0307509_100948556	F029295	N/A	MRMIPSSVPKVKMVEVANPELGSLWWIKGMGVGNRGVRLRFQGFLYCLVDFQSLLVDLKCGDPRS