Scaffold Ga0307509_10055090

Overview

Basic Information

• Taxon OID: 3300031507
• Scaffold ID: Ga0307509_10055090
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4228
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.0356
  • Long. (^o): -122.86

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044236	Metagenome	154	Y
F059500	Metagenome	133	Y
F075486	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307509_100550903	F059500	GGA	MSRVSVDFSHLAGSAAFDILSYEEFHSGPPVVGRDKLEGFGNSGMSSGFVVMKKGCYSPPKVIVCHNNKCCSMVPVSAVQ
Ga0307509_100550904	F044236	N/A	MKTDAFKQSVSVIVRIVSYPPDKGSLVMKSIPTVLKGRAFSVGVIGNIGG
Ga0307509_100550905	F075486	GAGG	VPVVLLSATEYLKVLFKGLVSSFTGSICLRVIGCADVLVDIQDAAEFR