Scaffold Ga0307509_10047823

Overview

Basic Information

• Taxon OID: 3300031507
• Scaffold ID: Ga0307509_10047823
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4599
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.0356
  • Long. (^o): -122.86

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055313	Metagenome	138	Y
F057784	Metagenome	135	Y
F061393	Metagenome	131	Y
F065271	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307509_100478233	F065271	AGGA	VLPRIEQPLPPAPHSHHTSISGNSDLVGATSQIYLPEVIYLGVTAPTRNRTELHIFKQHCLFLLQNRTEKHISHPLTELQTITPHIGAFNKFFWKYRTLITINGILEDYRGITHHSDTRTPCLVKVCTIFYSWDNSSYTVTLA
Ga0307509_100478236	F057784	GGA	MPEEGFVVEQGDLSGWRLVEVVSAGELPICSATSCCVKDVNKLVINIMIEALSAEETTKGKDI
Ga0307509_100478237	F061393	AGG	VSEPKGRETRKDKLNQVQEGGLDVTEGEVGGPWVLAYFGTDVDQGEGAVRVDVDGVMGIGMEGGDEIQGCGGIKVLGPGDIIKKVAVDKFL
Ga0307509_100478238	F055313	GAG	MAVLLVVNGVLVRVTVGREAGRGGEEVFKGGDIDCRVKYRERERSG