Scaffold Ga0314826_108888

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0314826_108888

Scaffold Ga0314826_108888

Overview

Basic Information
Taxon OID	3300031493 Open in IMG/M
Scaffold ID	Ga0314826_108888 Open in IMG/M
Source Dataset Name	Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - MICR_R5 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	999
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Surface Biofilm Microbial Communities From Soil Inoculated With Nitrogen-fixing Consortium Dg1, State College, Pennsylvania, United States

Source Dataset Sampling Location
Location Name	USA: Pennsylvania
Coordinates	Lat. (^o)	40.7997	Long. (^o)	-77.8629	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F054992	Metagenome / Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0314826_1088881	F054992	N/A	IASLVYWSPPADAARRVCVLPANSSAAEWVADRVRALTRSERGSGNWEQDIGGTSPFATPGSPFPVPSTQPAGAEIYKTMTERRLDFRLYTLPTTSGPITRLLNTESRYEASLNFWDVPGEVYDGDVPPNILREMTRARGLILLINPSYVPDEGRERYYMRFFDRTLGKLKFALADAARRGERVPFDPKTNQLTIPVAVCLSQIDRAPQFMDAEPKALFEETVGDTAPILYSWLTTFDIFKLTAFGKPLRRVGDREVLDGEPQPKFVHLPISWIVDRTADGRTPADRITRGKA

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