Scaffold Ga0314815_101874

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0314815_101874

Scaffold Ga0314815_101874

Overview

Basic Information
Taxon OID	3300031480 Open in IMG/M
Scaffold ID	Ga0314815_101874 Open in IMG/M
Source Dataset Name	Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - STER_R6 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1476
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Surface Biofilm Microbial Communities From Soil Inoculated With Nitrogen-fixing Consortium Dg1, State College, Pennsylvania, United States

Source Dataset Sampling Location
Location Name	USA: Pennsylvania
Coordinates	Lat. (^o)	40.7997	Long. (^o)	-77.8629	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051771	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314815_1018742	F051771	GGA	MQGNMTDGPSHLEPVDDQAVPKPGRRWTWDRLGPHASRVALELFIVFVGVSAAFAVENYRDARQQDLRRLAVYRALDRELTQMAETHGPVFQRQMTEQLTVWDQAVAKGEHPLPPTFRMPRAERPPTGVWDAAVATGSIELIDPELFFELARLYNRAESAGDLYQRYATSAQADVWARLDEGPGAFWQPDGKLRPEIKAHVQRLRDFQDLQGQRVN

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.