Scaffold Ga0170818_115239681

Overview

Basic Information

• Taxon OID: 3300031474
• Scaffold ID: Ga0170818_115239681
• Source Dataset Name: Fir Coassembly Site 11 - Champenoux / Amance forest
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1049
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location

• Location Name: France: Mazerulles, Grand Est.
• Coordinates
  • Lat. (^o): 48.7585
  • Long. (^o): 6.3578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019349	Metagenome	230	Y
F027932	Metagenome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0170818_1152396812	F027932	N/A	VGAFVVLVAVQLSVIGSYLPPVFEKIPTFPPQTIISLPVHTAV
Ga0170818_1152396813	F019349	AGCAGG	VVLVAVQLSVLGLYLPPVFKLPPLNPPQTIISLPVHTAVGPARPAGALVVLVAVQLSVLGSYLPPVFR