Scaffold Ga0170818_105951819

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0170818_105951819

Scaffold Ga0170818_105951819

Overview

Basic Information
Taxon OID	3300031474 Open in IMG/M
Scaffold ID	Ga0170818_105951819 Open in IMG/M
Source Dataset Name	Fir Coassembly Site 11 - Champenoux / Amance forest
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	870
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location Name	France: Mazerulles, Grand Est.
Coordinates	Lat. (^o)	48.7585	Long. (^o)	6.3578	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003899	Metagenome / Metatranscriptome	463	Y
F018984	Metagenome / Metatranscriptome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0170818_1059518191	F018984	GGGGG	VKAPACDPGDFCIALRAKSALFMPEIAKSAGTPKRFQHVSPFAFFEVGFIGWIVRVSFALYLDVSFDGSALGVVQPDFIWPSFVIAGFTEEGPVTIPAPVKVFRFEPAWAFVWVPSSCPLPQTREDVEIHVSKCTFTHHVPMIVRPTMNLGVELIDQIGGRHAMCVFDDSSDALQEGSNILLGRHDEQFPVGIPAHILSEKIKAVLHVRNDGLRRRK
Ga0170818_1059518192	F003899	GGCGG	VPRTAFYFIPSAMTGFIVSVFPFRNRVSSTEAFEGLELGEGKLSRPVLRGPGGRKAAWLL

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