Scaffold Ga0170819_12938885

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0170819_12938885

Scaffold Ga0170819_12938885

Overview

Basic Information
Taxon OID	3300031469 Open in IMG/M
Scaffold ID	Ga0170819_12938885 Open in IMG/M
Source Dataset Name	Fir Spring Coassembly Site 11 - Champenoux / Amance forest
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1622
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location Name	France: Champenoux
Coordinates	Lat. (^o)	48.7585	Long. (^o)	6.3578	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F042033	Metagenome / Metatranscriptome	159	Y
F070583	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0170819_129388851	F042033	AGGAG	MNDQNRVLVRRGARSLNEEEISRVSGGLPTDTVCTVPSKVCPNKDGDASIGECGPIC
Ga0170819_129388855	F070583	AGGAG	MTEESRVLIRQGARELDREETGRVGGSIGTLTACTWDPDFGKDGDASIGEC

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