Scaffold Ga0307513_10033625

Overview

Basic Information

• Taxon OID: 3300031456
• Scaffold ID: Ga0307513_10033625
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5761
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 45.9233
  • Long. (^o): -120.701

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045167	Metagenome	153	Y
F080948	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307513_100336253	F045167	AGGAG	MKSFHLTSRGRAMFLAFAALTGAPQFASAVQMNVYVSTPSQWGTGSAFYLGHTVLASTDFNILNAGGNYTVQCNHPATLPMTGERSLGSSTYGFDKNRLTVTIPAQQPAIQNISGWLQVPDNTILSCNYRWTAFATEGGYTVGAGGISFQVGNGTMRDGGTVNFTLYRPSREDADGGCIP
Ga0307513_100336254	F080948	AGGAG	MHVPSYPRVAAWLPMMMLILASFTGGAQAVEFDERTKAPMARGGAALKTQAESYSASFARLSTASPAEMVTDKVLAQERFELEWQLTRALEDQRPLEDLSALGLVKYENGFRIDYNAFPQWQPFPERIASLMPTMSMNVAGPQLVARGFRESDVAILRSYLETHDLKAETSARTLPIAISFSKVVKKYDKIKRPVGKDVVFSFLYQRNKTELEARRAWSESLIRTLDEQRVRVLDSYLSETQGIGYWSPSDSEAGVASLLATMRLPDYEQRATAEAAGATP