Scaffold Ga0307505_10005799

Overview

Basic Information

• Taxon OID: 3300031455
• Scaffold ID: Ga0307505_10005799
• Source Dataset Name: Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6909
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 48.4473
  • Long. (^o): -122.323

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020818	Metagenome / Metatranscriptome	222	Y
F043811	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307505_100057993	F043811	AGG	MRPLVTWLLVGALLVLGLLAARDALQSEGSAAPPPTTTEDTIKTAAGPPAIPGRTALVTQLKEIGAHGVLYVTDVACRRFILRLPTLEWTTSRELPGSDCGLWTRQPSDADSGLAARQVNADTIEVSSGGWSFGFEGISPAFKPDGILTFVRDGRLREWTGRCPETARKVVFEGLHDVTRCDRPVAGAPRDVREVAWLSVRDYAVVAGPDGATSLEVVRGGRTERLFNSVGARMGALEASPSGRYVVVRLDGALTLLRTDVSRVLRPLPANDELVRSITWSRDERLAALATDSAVAVFPSDAAGRAVRIPLSVKTVQWR
Ga0307505_100057999	F020818	AGG	MPGRVGDRRVAGKAFIGPATALVAATVAFSGCGGSEPTSFTPEVQENFVNSCVDSATEGSSPADESDAERICGCMYDGLKARMSFEEFKAADDSLREGEQMSTELAATLKAAASACA