Scaffold Ga0307505_10000233

Overview

Basic Information

• Taxon OID: 3300031455
• Scaffold ID: Ga0307505_10000233
• Source Dataset Name: Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 67242
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (82.46%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 48.4473
  • Long. (^o): -122.323

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011793	Metagenome	287	Y
F035463	Metagenome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307505_1000023346	F011793	GGAGG	MNQWRSPIPQRFKPVNCCALILFSLILVGFAKVVKSQSLIPGQTVRERNRSMDEYDRTINRMKNDSKVARERRKSLFPQINEDFQRIQVIHNEIVRMIQPDKNLDYDRLAELTDDMKKRSARLRDNLSLPEPEKPETKPAHTEAIDESHMKKNIVALHDEVVNFVANPIFKNLGVVDAKVIDSATDSLDKIIDLSDEIKREAKVLGKSAKK
Ga0307505_1000023353	F035463	AGGAG	LSKPATTIDLAAFKKQLAELLERNAKAAGQTIVKESLTCEMGIGLQVVTATLKRDELPTEKEITAGVDLFYAYVSLDGQRALPPGFYRIRLALPGYEKSGDVKVSFIDASGKSVHSLTGNGSPRRLKPGADDTSITTLTLRAGVCGRKKCFNITRNGFLDWEWGCTDTNGNTINCLDRQP