Scaffold Ga0272427_1000462

Overview

Basic Information

• Taxon OID: 3300031454
• Scaffold ID: Ga0272427_1000462
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Siegfried Peak sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 103704
• Total Scaffold Genes: 96
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 86 (89.58%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.57
  • Long. (^o): 161.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007999	Metagenome	341	Y
F032031	Metagenome / Metatranscriptome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272427_10004625	F032031	GGAG	MTDDPRTTSEIPVGMPVTAFDGSPLGDVREVYPHYLLVGHEGQHTDLEVPVHAILGVEDGALRVSVNREAVTEVDDEETAHRMGGEVE
Ga0272427_100046271	F007999	GGAGG	VDDAERLAHAERGDKARANLVNALRECGQLADAVETFQGRELIEVLDYLDSLRFVMAESGQLLAGVVRGSQG