Scaffold Ga0170820_11089864

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0170820_11089864

Scaffold Ga0170820_11089864

Overview

Basic Information
Taxon OID	3300031446 Open in IMG/M
Scaffold ID	Ga0170820_11089864 Open in IMG/M
Source Dataset Name	Fir Summer Coassembly Site 11 - Champenoux / Amance forest
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	993
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location Name	France: Mazerulles, Grand Est.
Coordinates	Lat. (^o)	48.7585	Long. (^o)	6.3578	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003551	Metagenome / Metatranscriptome	480	Y
F010636	Metagenome / Metatranscriptome	301	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0170820_110898641	F010636	AGGAG	MKDLSRLFLAPTLAAVLLLACTPTNAARRIGGSPYDGIWSVAIYTLRGDCGSVRVAARIAGGRVYSADQSYQANGAVGANG
Ga0170820_110898642	F003551	N/A	MVSACGIARLPPKPAEKQKLMFRLRRRDWIILTAFIVAGAVGYVVYSKWAEEGLRRTEADMKSNLPLQVDQNTTLVDVKYERTHSIYWYVIDKPDQFDAQETARQVQIGVCTNADNSNTMKKEGFSYEYHYKTKDGLALTDFKVTTCE

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