Scaffold Ga0170820_10884267

Overview

Basic Information

• Taxon OID: 3300031446
• Scaffold ID: Ga0170820_10884267
• Source Dataset Name: Fir Summer Coassembly Site 11 - Champenoux / Amance forest
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 697
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location

• Location Name: France: Mazerulles, Grand Est.
• Coordinates
  • Lat. (^o): 48.7585
  • Long. (^o): 6.3578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015158	Metagenome / Metatranscriptome	257	Y
F077917	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0170820_108842671	F015158	N/A	MVSKDHSKPASKPDAEPAGKPSAPDAKSGDKSTGRVRFDERGTAIWEWSIATGAFGREVTTARLQKLEHPALSLADDAPTPFETVRANPLGTKKGYDPYDSGKLGKRPEPPKKKDLRRLSEFLKLKKQAESNKDDDE
Ga0170820_108842672	F077917	N/A	AAPDADEELELQWLPLEEAVARVLRCDWNDGKTALALWRAQYQLQL