NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307975_1061704

Scaffold Ga0307975_1061704


Overview

Basic Information
Taxon OID3300031392 Open in IMG/M
Scaffold IDGa0307975_1061704 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #917
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1436
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4563Long. (o)78.1898Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001408Metagenome702Y
F008116Metagenome338Y

Sequences

Protein IDFamilyRBSSequence
Ga0307975_10617041F001408N/AMKKFKDYLKRTRHHLHAIVGITGGFLASLALSWVWLGFRNLDSLDKAILFICPAFLIGYAWERYQGIINKWDILVSGIAISTGVYLGGLLF
Ga0307975_10617043F008116N/AMSLGFGFGLQYSKLSGGGGIDPQAQAQITRIQNAGGTIEDANVIDADIKFLKSIGLFANLKYAVDPRAGIIQRVDGSDTFASKIFDYSGSDADTDNSTGSEQPQKGILNGVTSLDFDGVNDRLTNTNTVSFLAGAEMFSVAVYAQDFNNSAPAGAVVDKFSPDENGKAFRKRGIQIVVFARNDNAPFSPYNNVQILASGTATTDNLLTGFINGVQETQETLSVNYIGKTLGEIRGVRNDNLCAKAQFQKNWDFDALPTLSQAAAINTYLTNQFNIS
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