Scaffold Ga0307947_1005047

Overview

Basic Information

• Taxon OID: 3300031387
• Scaffold ID: Ga0307947_1005047
• Source Dataset Name: Saline water microbial communities from Organic Lake, Antarctica - #232
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10218
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.4561
  • Long. (^o): 78.1899
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008469	Metagenome	332	Y
F104106	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307947_100504714	F104106	AGGA	VYLVRYRVDDIDMLGGRSDFLCEHLYCMVVVISDL
Ga0307947_10050478	F008469	GGTGG	VAGGAAEVLPVSLNCPLPLRRTHPPTLVCCVCVFAALGVTSTKSGRLEINLSLFGKRGGKSHLGTILLSAISGIWRFCMVIRSLLPISLETMHDPKEPVLQIALKIMRHAKLCLSVFMYLICVCWHPGRMCRALSTYGQRGQV