Scaffold Ga0307434_1028275

Overview

Basic Information

• Taxon OID: 3300031379
• Scaffold ID: Ga0307434_1028275
• Source Dataset Name: Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-220
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1880
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Brevibacillus → Brevibacillus brevis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Salt Marsh Sediment Microbial Communities From The Plum Island Ecosystem Lter, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.759
  • Long. (^o): -70.891
  • Depth (m): 2.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F100335	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307434_10282753	F100335	GAGG	MSQLLDELRMLIEDESEEDFTDTQLGRYLNKYRKRLDDYPLTVETDEYLIWRCDYRYLDSVVLDSTTDTPVTDSYTSDDLNGIYTFETAQTTLYIKAYYYDLYKTASDIWLVRAAQAKFSGDVQLSDEKLPMDKYNREYCIQKYWDLRQSDTTEMERG