Basic Information | |
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Taxon OID | 3300031351 Open in IMG/M |
Scaffold ID | Ga0307427_1000473 Open in IMG/M |
Source Dataset Name | Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-190 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 25391 |
Total Scaffold Genes | 42 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 38 (90.48%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Salt Marsh Sediment Microbial Communities From The Plum Island Ecosystem Lter, Massachusetts, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Massachusetts | |||||||
Coordinates | Lat. (o) | 42.759 | Long. (o) | -70.891 | Alt. (m) | Depth (m) | 1.9 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F019930 | Metagenome / Metatranscriptome | 227 | Y |
F035608 | Metagenome / Metatranscriptome | 171 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0307427_100047314 | F019930 | AGGAG | MRKIKLADYMVKVKAPDQMNPGKIIEGEYPYRVKDSILNLMFIPSLQLNGAELVKQNVLAMKLEQCKEDVILLEDEEYNRIKRAIDTFKGFGRNDVELVTRINEAEVVAVEQK |
Ga0307427_100047327 | F035608 | GAGG | MAIADTNSIIFSYLVTQAPLVALVGRRIFTPRLPENATLPAISFFTRGGTSTPYIPGIPEPSVQFDCWADNPITARQVYCALYDALQGIQDITVGAYKILSAIEEVQGQDLVDVEIPNYFRTLTFFRIMVRAE |
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