NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265316_10012741

Scaffold Ga0265316_10012741


Overview

Basic Information
Taxon OID3300031344 Open in IMG/M
Scaffold IDGa0265316_10012741 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7515
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location
Location NameUSA: Seattle, Washington
CoordinatesLat. (o)47.6516Long. (o)-122.3045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001559Metagenome / Metatranscriptome671Y
F003175Metagenome / Metatranscriptome503N
F004122Metagenome / Metatranscriptome452Y
F008922Metagenome / Metatranscriptome326Y

Sequences

Protein IDFamilyRBSSequence
Ga0265316_1001274112F001559GAGGMSEVTQGELNGSIAVRKWIGDVSADRVGQVWRVEDHEALLRTMRAADELTLALVALARREALEAGLGTNERVDLDGIRSTAEPVGVNIHAHGD
Ga0265316_100127413F004122N/AMTEKGLSGSGRRSAELRYEWQSFLGLLPLLDLRPMDPVLYQRCLTAVWRSRKSAISRRDLQRAAGLAFQEETLDFDLLVAQLVREGILEPIVSSPFDFQIRRRNWTNPESAYAADDRLSLSTISREEQTARFRMLGLLDARILNPSLPQKRVQQIRKERDELERIYDATWMELENAIGSRAAEAIRKSVEEATEARAVQLDLPLEKKRTFDLEGEARCNQ
Ga0265316_100127416F003175AGGGGGMNRIELSGKSQGKGRNGYFQLHSVELMNIPTDPEGQVLNIDFYPRRRVNCVGPARLLLNVEDATKLARFFGEAVESRPPVASIANGELVCECGHRGTPRLEESGYQVSHTLVEIVGDTIIASGWDGSSRAVSEDGDAYWLMCEGCRKLHPLPPELHIDWR
Ga0265316_100127417F008922AGGTGGMTTRQRLACGAAILRSIDARRQRTGNRKELLALEQAIVDRELLELVTGGLCDEKREFAGDRVRKRYAPAATRDTGPLYEKDLGGQTDEPDRA
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