NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307936_1062164

Scaffold Ga0307936_1062164


Overview

Basic Information
Taxon OID3300031333 Open in IMG/M
Scaffold IDGa0307936_1062164 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1093
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003552Metagenome480Y
F018841Metagenome232Y

Sequences

Protein IDFamilyRBSSequence
Ga0307936_10621641F018841N/AMNVSLNLSPGQLSKLRNGHGIRIGPAMFGKGVDMIIDPMTFNNMMKKLERGKGAVISMSGGEIEQNKMEGTGLFAGAGKKSGKISRIKKARKWRDFSDETLRKGIDTGRYGYEQFKEATNPLKSEGKKVIKGLSKMFGGELEGDEDEFEGEGFFDDIKKGYNKKVKNSALGKALRESAGMAISDGYDRGAREIGKNKYGKPISQYMRNKRGSNVDKLTGYTGLGLRMAGDGKMRPAVMPRRKIDLEEMK
Ga0307936_10621642F003552N/AYQSFNNEFFNEFGVNGNQSSGMGSSLIDFKSWLKKPYYYVNCSRVPMEQQNAYRSLQIKGTNSSALAMDYMIFAVYEKNFQLDVISGNINKID
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