Scaffold Ga0307936_1031995

Overview

Basic Information

• Taxon OID: 3300031333
• Scaffold ID: Ga0307936_1031995
• Source Dataset Name: Saline water microbial communities from Organic Lake, Antarctica - #1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1560
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.457
  • Long. (^o): 78.1911
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001408	Metagenome	702	Y
F008116	Metagenome	338	Y
F020291	Metagenome	224	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307936_10319951	F008116	N/A	DWGKGVINDIGWGQGANNDIGWGSIYDKSNSGETLLSGGGIDPQAQAQITRIQNAGGTIEDANVINEDIKFLKSIGLFNNLKYAVDPRAGITERVDGSDTFASKIFDYSGSDADTDNLQGSEQPKKGILNGITSLDFDGVDDSLTDEDTVSFLAGQEMFSLAVYAQDFDNSSILGMVVDKFSPNNGGKVFGTNGGNIVIFSSSVDSTSYQDVQIIASGTSDTSNTIKGFINGVQKVSGSSDTEYIGKSLGRIRDGVSGFYAKAQFQKNWDFDALPTDSQKDAITDYLQAQFNITF
Ga0307936_10319952	F020291	N/A	MYYTGTKTECEAYNLEVYTNTPSMKLDPFTTSYASIQEIEGQFYILKHKDFESNMEEVNQVPNNTEI
Ga0307936_10319953	F001408	N/A	MKKFKDYLKRTRHHLHAIVGITGGFLASLSLSWVWLGFRNLDALGKAVLFIYPAFVIGYAWERYQGIINKWDIFVSGVAICLGVYLGGLLF