Scaffold Ga0307432_1000013

Overview

Basic Information

• Taxon OID: 3300031331
• Scaffold ID: Ga0307432_1000013
• Source Dataset Name: Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-150
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 160543
• Total Scaffold Genes: 163
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 129 (79.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Salt Marsh Sediment Microbial Communities From The Plum Island Ecosystem Lter, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.759
  • Long. (^o): -70.891
  • Depth (m): 1.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037495	Metagenome	168	Y
F094910	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307432_100001329	F037495	N/A	MNNTDDSASDEEQLETVPMDYSALLAMTRPLVITEDDLLSLRGDEVFRLGFGISPEPADRRAEFALRRGEILCPEGECDVARESIFALGETGSNLKLRIYLGTS
Ga0307432_100001393	F094910	AGGAGG	VRKLISIGVILALLVTFMVPVVVGAQDECDNPCDYTPPEGGPLPEKTTKTLAGAAVWTMLGVQDIMGRAVCATTGQMAANLGGWSDELGVITVDVSGAVLDGLADILEYVMDSFLDMAELGESIGDLLRGIGDAIQGTEE