NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307432_1000013

Scaffold Ga0307432_1000013


Overview

Basic Information
Taxon OID3300031331 Open in IMG/M
Scaffold IDGa0307432_1000013 Open in IMG/M
Source Dataset NameSalt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)160543
Total Scaffold Genes163 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)129 (79.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Salt Marsh Sediment Microbial Communities From The Plum Island Ecosystem Lter, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.759Long. (o)-70.891Alt. (m)Depth (m)1.5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037495Metagenome168Y
F094910Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0307432_100001329F037495N/AMNNTDDSASDEEQLETVPMDYSALLAMTRPLVITEDDLLSLRGDEVFRLGFGISPEPADRRAEFALRRGEILCPEGECDVARESIFALGETGSNLKLRIYLGTS
Ga0307432_100001393F094910AGGAGGVRKLISIGVILALLVTFMVPVVVGAQDECDNPCDYTPPEGGPLPEKTTKTLAGAAVWTMLGVQDIMGRAVCATTGQMAANLGGWSDELGVITVDVSGAVLDGLADILEYVMDSFLDMAELGESIGDLLRGIGDAIQGTEE

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