NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307934_1070914

Scaffold Ga0307934_1070914


Overview

Basic Information
Taxon OID3300031329 Open in IMG/M
Scaffold IDGa0307934_1070914 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #90
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)898
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008895Metagenome / Metatranscriptome326Y
F082327Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0307934_10709141F082327N/AMSSVDAMAESLNFPNMKRRAVASRSYRVKISPSNGQ
Ga0307934_10709143F008895N/AVLLSSKVNPSFHITMPSCVNFSGTRFIFLKFKNISVNNLNSKGLTDDAIVRIDNNVPFGYMIFYKPAEAHRFLVGKQTITSIQFTLTDTQGNDLNIFSNDAQITLKIEYIYKAEMRSMEEGTINYELRKLGKIPKDEETLKGIYNPETNEFIRE

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