Scaffold Ga0307431_1000718

Overview

Basic Information

• Taxon OID: 3300031278
• Scaffold ID: Ga0307431_1000718
• Source Dataset Name: Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-170
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21249
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (63.16%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Salt Marsh Sediment Microbial Communities From The Plum Island Ecosystem Lter, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.759
  • Long. (^o): -70.891
  • Depth (m): 1.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014811	Metagenome	260	Y
F034747	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307431_10007181	F034747	N/A	MIGKGNDMSRNAYRVKRIVTAKSPSFNLSYDEELVGILEENTDFNFTLNNYGNGIFEVTDREFKELKEKLEELISGLKSTKTNQPENKEKAKCYRKVL
Ga0307431_10007185	F014811	AGGA	MWIYDYRTKKEYFASSPRSKFYNYISIVVEPIPGKPCTILIKKEMEEGRKPAQTFEQLDIFETLSASPTT