Scaffold Ga0307442_1039223

Overview

Basic Information

• Taxon OID: 3300031274
• Scaffold ID: Ga0307442_1039223
• Source Dataset Name: Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1604-30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1550
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Salt Marsh Sediment Microbial Communities From The Plum Island Ecosystem Lter, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.759
  • Long. (^o): -70.891
  • Depth (m): .3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020378	Metagenome / Metatranscriptome	224	Y
F022938	Metagenome / Metatranscriptome	212	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307442_10392232	F022938	GGAG	MQDAGQMTPQVSPLQLLFIELRVGLARSAIQSSLLLNGGAAVALLLLLGNILASPAQRSLLVDVSQLKWAFALFGAGLFLASITFVNAYIAQGALASGQSSAFGNAVRRLGLGLIMASLLLFLAGVGLVLTAI
Ga0307442_10392233	F020378	AGGAG	MRKYLIAAALTAAFVTPALAEQFYVVFDPASHKCEAMHNIPSGMKSMGTYGSMDEAKKAMASMKECG