NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302140_11097229

Scaffold Ga0302140_11097229


Overview

Basic Information
Taxon OID3300031261 Open in IMG/M
Scaffold IDGa0302140_11097229 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)539
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062360Metagenome130Y
F075559Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0302140_110972291F062360N/ACLKIVRLWSQSSTLPRPRREEIIEEEQRIASLYAAILFEIGSAFGLRAADELRVRIEAACILDDWECPPAEQGLLFPNPNDPTTKASPATPRK
Ga0302140_110972292F075559GAGMETIIREVNPARLAWGTYDHEKNDYVSEGDIPASYSGDSIAMGQPVRKPFRMDGEMWVAIGLSNHGAKAYRLCPLRVFNGTP

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